[Bioperl-l] Fwd: BioPerl and BioLib

Chad Davis chad.a.davis at gmail.com
Fri Feb 6 08:50:31 EST 2009


If you're looking for requests, how about something for structural
bioinformatics:

http://www.bioinf.uni-sb.de/OK/BALL/

... though BALL might be as difficult as SeqAn, as it's also C++/templated.
Though, I believe it already provides Python bindings (via Swig?). Maybe
that makes it easier ...

Chad

On Fri, Feb 6, 2009 at 14:02, Chris Fields <cjfields at illinois.edu> wrote:

> I'll forward this onto the list.  Something that links into EMBOSS would be
> nice, or even SeqAn.  SeqAn may be a bit of challenge as it is C++ and uses
> templates:
>
> http://www.seqan.de/
>
> BTW, the NCBI toolset has a perl API but there are several problems with it
> not least being it's precompiled only for Linux:
>
> ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools%2B%2B/2008/Mar_17_2008/Perl/
>
> -c
>
> Begin forwarded message:
>
>  From: Pjotr Prins <pjotr2009 at thebird.nl>
>> Date: February 6, 2009 3:38:42 AM CST
>> To: Chris Fields <cjfields at illinois.edu>
>> Subject: BioPerl
>>
>> Hi Chris,
>>
>> While we are at it, and in the flow, I would like to add another
>> library to biolib. What do you suggest is a need for? Maybe you can
>> post a question on the BioPerl mailing list? Anything that will give
>> some real users. Emboss Nucleus or AJAX? Or some part of the NCBI
>> toolset?
>>
>> Pj.
>>
>
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