[Bioperl-l] load_seqdatabase.pl memory requirements unusually large

Hilmar Lapp hlapp at gmx.net
Sat Feb 7 16:04:13 EST 2009

On Feb 6, 2009, at 4:26 PM, Chris Fields wrote:

> Could that have something to do with using a loaded database for  
> tests?  I thought tests were supposed to be run with a clean  
> database (with the biosql schema but nothing else).

Yes. But the errors resulting from using a database that has stuff  
left over from previous test runs (for example because transactions  
and rollback aren't supported) ought to result in failing tests, not  
in premature termination of the test scripts, which is what is so odd.

: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :

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