[Bioperl-l] Indexing CDS file
David.Messina at sbc.su.se
Wed Feb 11 18:24:21 EST 2009
I just committed support for these weirdo CDS records, along with some
One unexpected issue cropped up:
I had to make a change in _read_EMBL_Species to have it pushback() a line
after slurping all of the 'OS' and 'OC' lines, since the slurping loop was
improperly consuming the next line after the final 'OC' line.
I don't think anybody noticed before because vanilla EMBL records have a
spacer 'XX' line as the next line, whereas the CDS records have the 'OX'
Tests pass, but please let me know if you see any issues.
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