[Bioperl-l] Indexing CDS file

Chris Fields cjfields at illinois.edu
Wed Feb 11 19:41:12 EST 2009

I'll likely merge it over tonight to branch.  Thanks Dave!


On Feb 11, 2009, at 5:24 PM, Dave Messina wrote:

> I just committed support for these weirdo CDS records, along with some
> tests.
> One unexpected issue cropped up:
> I had to make a change in _read_EMBL_Species to have it pushback() a  
> line
> after slurping all of the 'OS' and 'OC' lines, since the slurping  
> loop was
> improperly consuming the next line after the final 'OC' line.
> I don't think anybody noticed before because vanilla EMBL records  
> have a
> spacer 'XX' line as the next line, whereas the CDS records have the  
> 'OX'
> line.
> Tests pass, but please let me know if you see any issues.
> Dave
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