[Bioperl-l] problem parsing a newick format

Mark A. Jensen maj at fortinbras.us
Thu Feb 12 08:44:47 EST 2009

Aye- I was surprised it didn't croak.
  ----- Original Message ----- 
  From: Dave Messina 
  To: Mark A. Jensen 
  Cc: Chrysanthi A. ; bioPerl List 
  Sent: Thursday, February 12, 2009 8:41 AM
  Subject: Re: [Bioperl-l] problem parsing a newick format

  By the way, if I read the thread correctly, this

             my $input = new Bio::TreeIO(-fh =>"nexusCytochrome7R.newick",
                                       -format => "newick");

  did not throw an error, because the file nexusCytochrome7R.newick is not a filehandle.

  Presumably it should, no?



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