[Bioperl-l] Sequence Character Visualization

Mark A. Jensen maj at fortinbras.us
Tue Feb 17 07:42:42 EST 2009


Hi Shafeeq-
Check out http://www.bioperl.org/wiki/Simple_graphical_alignment_overview - 
might be what you're looking for-
Mark
----- Original Message ----- 
From: "shafeeq rim" <hsa_rim at yahoo.co.in>
To: <bioperl-l at lists.open-bio.org>
Sent: Tuesday, February 17, 2009 4:30 AM
Subject: [Bioperl-l] Sequence Character Visualization


> Hi guys,
>
> I want to just visualize a sequence in horizontal manner reading from a genome 
> fasta file / genbank file as per the given genomic location..
>
> Suppose I want to visualize a sequence string from 1000 - 1100 nucleotides in 
> horizontal string like manner in terms of an image.
> Is there any such tool or library that can do it for me... I am not looking 
> for alignments but just linear visualization.
>
> Thanks
>
>
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