[Bioperl-l] I don't get the plain sequence

manni122 markus.liebscher at gmx.de
Thu Feb 19 12:15:37 EST 2009

Hi, maybe I am somehow unable to display the plain sequence from a
Bio::AlignIO object.
I put 2 aligned sequences in an array 
while (my $aln = $input->next_aln()) {
  push @nuc_seqs, $aln;
  $seq1 = $aln->get_seq_by_pos(1);
  $seq2 = $aln->get_seq_by_pos(2);

How do I get to know the sequences stored in the variables. I couldn't find
a hint. Thanks for help...
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