[Bioperl-l] evalues/floating point tests
Mark A. Jensen
maj at fortinbras.us
Sat Jan 17 17:06:23 EST 2009
I am getting these funky fails as well (ActiveState/Cygwin/Vista and
strawberry/Cygwin/Vista); I'm all for the kludge, should prevent a LOT of
chatter at support, but I can try to ferret out the underlying issue.
----- Original Message -----
From: "Chris Fields" <cjfields at illinois.edu>
To: "BioPerl List" <bioperl-l at lists.open-bio.org>
Sent: Saturday, January 17, 2009 4:53 PM
Subject: [Bioperl-l] evalues/floating point tests
> I've noticed an odd issue when testing BioPerl on WinXP yesterday which
> doesn't appear to be popping up anywhere else. When comparing floating point
> numbers, several tests fail like the following:
> # Failed test at t\SearchIO\blast_pull.t line 40.
> # got: '1e-23'
> # expected: '1e-023'
> # Failed test at t\SearchIO\blast_pull.t line 67.
> # got: '6e-59'
> # expected: '6e-059'
> These are generally in lines like (for the example above)
> is $result->get_parameter('expect'), 1e-23;
> I'm adding a method to Bio::Root::Test for comparing two floating point
> numbers based on equality:
> float_eq $float1, $float2, $message;
> This basically wraps is() but runs both values through 'sprintf("%g", $foo)'
> prior to the comparison; it has a prototype requiring two values to be passed
> and an optional message. Any objections to the method name or adding this
> in? I've already converted many of the tests in t/SearchIO over but wanted
> to pass it by the group prior to an actual commit.
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
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