[Bioperl-l] [ANNOUCEMENT] BioPerl 1.6 RC3

Martin MOKREJŠ mmokrejs at ribosome.natur.cuni.cz
Tue Jan 20 07:39:49 EST 2009


Brian Osborne wrote:
> Chris,
> 
> This is my doing. Way back when I made an individual test file for each
> SeqIO module, then did my best to find example files for each format. I
> never did find an ALF output file, these machines were used in the early
> '90's.

I tried to find one and really, except digging out that they used to have .alx
extension just nothing.

A bit off-topic on the other formats:

http://www.cs.cmu.edu/~genome/Papers/clark.html
http://www.cs.cmu.edu/afs/cs/project/genome/ftp/incoming/

http://www5.gelifesciences.com/aptrix/upp01077.nsf/Content/sequencing_site~mobility_files_download

http://www.appliedbiosystems.com/support/software/

http://www.plantbreeding.wur.nl/UK/software_crosschecker_conversion.html

M.

> 
> Brian O.
> 
> On Jan 18, 2009, at 12:07 AM, Chris Fields wrote:
> 
>> For some reason we have a test suite for Bio::SeqIO::alf but
>> apparently no test data!


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