[Bioperl-l] [ANNOUCEMENT] BioPerl 1.6 RC3

Martin MOKREJŠ mmokrejs at ribosome.natur.cuni.cz
Tue Jan 20 14:56:57 EST 2009


Mark Johnson wrote:
>>> t/Root/Utilities.............................1/50
>>> --------------------- WARNING ---------------------
>>> MSG: find_exe: Multiple paths to 'gunzip' found. Using first.
>>> ---------------------------------------------------
>>>
>>> $ whereis gunzip
>>> gunzip: /bin/gunzip /usr/bin/gunzip /usr/X11R6/bin/gunzip
>>> /usr/bin/X11/gunzip
>>> $ :-((
>>>
>>> In my case all the other gzunzips are soflinks to /bin/gunzip.
>> File this as a bug.  The check should make sure the others are not soft
>> links.  Won't be fixed in time for 1.6, though, but I remember this popping
>> up sporadically elsewhere.

Filed as http://bugzilla.open-bio.org/show_bug.cgi?id=2737

> 
> I got that warning too, and chased it a bit...turns out that locally
> we have some directories in PATH more than once.  Maybe that's worth a
> warning, maybe not, but if so, it should be a bit more specific.

I do not have duplicated entries in $PATH.

Martin


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