[Bioperl-l] About to tag the last RC...
cjfields at illinois.edu
Tue Jan 20 18:27:48 EST 2009
On Jan 20, 2009, at 5:04 PM, Kristine Briedis wrote:
> Hi Chris,
> My name is Kristine Briedis and I recently joined Scott's group at
> Accelrys. I just wanted to quickly follow-up on Scott's email. We
> traced the minor differences in BLAST scores back to revision 11578
> of Bio::SearchIO::blast.pm (bugzilla #1986). We will update our
> regression baselines to correspond with this bugfix.
> We also discovered that the tag type differences in the XML
> representation of our Pipeline Pilot records were related to two
> different revisions. We saw a change from "doublevalue" to
> "stringvalue" for the e-value after the aforementioned blast.pm
> revision 11578, and a change from "integervalue" to "doublevalue"
> for hsp hit gaps and hsp query gaps after revision 15014 of
> Bio::Search::HSP::GenericHSP. Again, we don't think this is a
> problem-we'll just update our baselines.
Okay, works for me.
> Thanks again for the quick response and bugfixes. Your work is very
> much appreciated!
No problem. Let us know if anything else pops up!
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