[Bioperl-l] help on chIP-seq format conversion

Jie Zhang jieuiuc at yahoo.com
Fri Jan 23 15:08:11 EST 2009


HI, 

I'm doing chIP-seq analysis, aligning millions of short nucleotide sequences generated from Solexa genome analyzer to a reference genome, and isolate peak regions in the genome where more short seq aligned to. The analysis requires frequent sequence format change among different peak finding programs. Has anyone done the conversion from .eland to .sga format, and .eland to .fa format with perl or bioperl or using any program?

Any information is appreciated.

Jie



      


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