[Bioperl-l] [ANNOUNCEMENT] Alpha 1.6 releases of BioPerl-run, BioPerl-db, BioPerl-network

Chris Fields cjfields at illinois.edu
Wed Jan 28 12:14:22 EST 2009


All,

I would like to announce that the first alpha releases for BioPerl- 
run, BioPerl-db, and BioPerl-network are available.  These are  
designated as 1.005009_001, with a requirement for BioPerl 1.6 and  
higher (1.006000).

TODO:

1) All subdistributions need updates to the Changes, BUGS, AUTHORS,  
etc files.  Please make updates as needed to the main trunk (I'll  
merge them over to the relevant branch).
2) BioPerl-run TCoffee tests are failing for me, but it appears to be  
an issue with the executable (I get a bus error).  Is this  
reproducible for others?

I believe BioPerl-db (if configured correctly) and BioPerl-network  
should pass tests w/o problems.  However, I would like to gather as  
many test results as possible from BioPerl users prior to a final  
release on CPAN, particularly with BioPerl-run (I would like to make  
sure that tests for wrappers are bypassed if the executable isn't  
present or an environment variable isn't set).

The archives can be downloaded from here:

BioPerl-run:

http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.bz2
http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.gz
http://bioperl.org/DIST/BioPerl-run-1.5.9_1.zip

BioPerl-db:

http://bioperl.org/DIST/BioPerl-db-1.5.9_1.tar.bz2
http://bioperl.org/DIST/BioPerl-db-1.5.9_1.tar.gz
http://bioperl.org/DIST/BioPerl-db-1.5.9_1.zip

BioPerl-network:

http://bioperl.org/DIST/BioPerl-network-1.5.9_1.tar.bz2
http://bioperl.org/DIST/BioPerl-network-1.5.9_1.tar.gz
http://bioperl.org/DIST/BioPerl-network-1.5.9_1.zip

SIGNATURES:

http://bioperl.org/DIST/SIGNATURES.md5

Cheers!

chris


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