[Bioperl-l] [ANNOUNCEMENT] Alpha 1.6 releases of BioPerl-run, BioPerl-db, BioPerl-network

Chris Fields cjfields at illinois.edu
Wed Jan 28 12:26:37 EST 2009


Forgot to mention, the alphas have been uploaded to CPAN PAUSE and so  
should be available shortly from here:

http://search.cpan.org/~cjfields/

chris

On Jan 28, 2009, at 11:14 AM, Chris Fields wrote:

> All,
>
> I would like to announce that the first alpha releases for BioPerl- 
> run, BioPerl-db, and BioPerl-network are available.  These are  
> designated as 1.005009_001, with a requirement for BioPerl 1.6 and  
> higher (1.006000).
>
> TODO:
>
> 1) All subdistributions need updates to the Changes, BUGS, AUTHORS,  
> etc files.  Please make updates as needed to the main trunk (I'll  
> merge them over to the relevant branch).
> 2) BioPerl-run TCoffee tests are failing for me, but it appears to  
> be an issue with the executable (I get a bus error).  Is this  
> reproducible for others?
>
> I believe BioPerl-db (if configured correctly) and BioPerl-network  
> should pass tests w/o problems.  However, I would like to gather as  
> many test results as possible from BioPerl users prior to a final  
> release on CPAN, particularly with BioPerl-run (I would like to make  
> sure that tests for wrappers are bypassed if the executable isn't  
> present or an environment variable isn't set).
>
> The archives can be downloaded from here:
>
> BioPerl-run:
>
> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.bz2
> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.gz
> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.zip
>
> BioPerl-db:
>
> http://bioperl.org/DIST/BioPerl-db-1.5.9_1.tar.bz2
> http://bioperl.org/DIST/BioPerl-db-1.5.9_1.tar.gz
> http://bioperl.org/DIST/BioPerl-db-1.5.9_1.zip
>
> BioPerl-network:
>
> http://bioperl.org/DIST/BioPerl-network-1.5.9_1.tar.bz2
> http://bioperl.org/DIST/BioPerl-network-1.5.9_1.tar.gz
> http://bioperl.org/DIST/BioPerl-network-1.5.9_1.zip
>
> SIGNATURES:
>
> http://bioperl.org/DIST/SIGNATURES.md5
>
> Cheers!
>
> chris
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