[Bioperl-l] How to retrieve info about whether a Seq is a partial or complete CDS

Christopher Goddard cgoddard at flmnh.ufl.edu
Wed Jan 28 13:02:21 EST 2009


I need to determine if a Bio::Seq object returned from GenBank by a 
Bio::DB::GenBank->get_Stream_by_query() call is a partial or complete 
coding sequence.  This information is given in the description for a 
sequence when performing a search on Entrez.  However, using the method 
desc() for the sequences returned doesn't relay this information, at 
least not all of the time.  If someone could point me in the right 
direction on where I could retrieve this information I would be really 
appreciative.

Thanks
Chris


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