[Bioperl-l] Bio::PopGen::Utilities->aln_to_population

Richard Harrison richard.harrison at edinburgh.ac.uk
Wed Jan 28 13:24:12 EST 2009


Hi all,
I have updated the aln_to_population part of  
Bio::PopGen::Statistics::Utilitities to include codon models for 4- 
fold degenerate sites, synonymous, non-synonymous sites and also a  
rough-n-ready indel excluder.... If you would like my script, (to  
include or vet!) let me know..  I want to expand the PopGen side of  
Bioperl  a bit further, as it doesn't do everything that I need at the  
moment.
Best wishes,
Richard



____________________________
Dr Richard Harrison
richard.harrison at ed.ac.uk
127 Ashworth Labs
Institutes of Evolutionary Biology
King's Buildings
West Mains Road
Edinburgh EH9 3JT






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