[Bioperl-l] How to retrieve info about whether a Seq is a partial or complete CDS

Jason Stajich jason at bioperl.org
Wed Jan 28 15:37:42 EST 2009


where is the information in the genbank record (as a text file)?
DEFINITION  ?

-jason

On Jan 28, 2009, at 10:02 AM, Christopher Goddard wrote:

> I need to determine if a Bio::Seq object returned from GenBank by a  
> Bio::DB::GenBank->get_Stream_by_query() call is a partial or  
> complete coding sequence.  This information is given in the  
> description for a sequence when performing a search on Entrez.   
> However, using the method desc() for the sequences returned doesn't  
> relay this information, at least not all of the time.  If someone  
> could point me in the right direction on where I could retrieve this  
> information I would be really appreciative.
>
> Thanks
> Chris
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Jason Stajich
jason at bioperl.org





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