[Bioperl-l] [ANNOUNCEMENT] Alpha 1.6 releases of BioPerl-db

Johann PELLET johann.pellet at inserm.fr
Thu Jan 29 07:28:19 EST 2009


Dear Chris,

I have the following error on my Mac machine: (BioPerl 1.6, BioPerl-run
1.6) when I try to install Bioperl-db ( biosql-1.0.1):

t/01dbadaptor.....1/23
#   Failed test in t/01dbadaptor.t at line 44.
#          got: undef
#     expected: ''
# Looks like you failed 1 test of 23.
t/01dbadaptor..... Dubious, test returned 1 (wstat 256, 0x100)
  Failed 1/23 subtests
t/02species.......ok
t/03simpleseq.....ok
t/04swiss.........ok
t/05seqfeature....ok
t/06comment.......ok
t/07dblink........ok
t/08genbank.......ok
t/09fuzzy2........5/23
#   Failed (TODO) test in t/09fuzzy2.t at line 64.
#          got: undef
#     expected: 'Q9QYG8'
t/09fuzzy2........ok
t/10ensembl.......ok
t/11locuslink.....ok
t/12ontology......ok
t/13remove........ok
t/14query.........ok
t/15cluster.......ok
t/16obda..........ok

Test Summary Report
-------------------
t/01dbadaptor (Wstat: 256 Tests: 23 Failed: 1)
   Failed test:  16
   Non-zero exit status: 1
Files=16, Tests=1479, 15 wallclock secs ( 0.27 usr  0.10 sys + 11.15  
cusr  1.11 csys = 12.63 CPU)
Result: FAIL
Failed 1/16 test programs. 1/1479 subtests failed.

-- --

Johann Pellet
IE Bioinformatique
INSERM U851, I-MAP CERVI
21, Avenue Tony Garnier
69365 Lyon cedex 07 France




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