[Bioperl-l] [ANNOUNCEMENT] Alpha 1.6 releases of BioPerl-db

Chris Fields cjfields at illinois.edu
Thu Jan 29 08:37:31 EST 2009


That one may be database-dependent; it passes for mysql 5.1.26-rc.   
What is your db (mysql, Pg, oracle) and version?

Hilmar, any ideas?

chris

On Jan 29, 2009, at 6:28 AM, Johann PELLET wrote:

> Dear Chris,
>
> I have the following error on my Mac machine: (BioPerl 1.6, BioPerl- 
> run
> 1.6) when I try to install Bioperl-db ( biosql-1.0.1):
>
> t/01dbadaptor.....1/23
> #   Failed test in t/01dbadaptor.t at line 44.
> #          got: undef
> #     expected: ''
> # Looks like you failed 1 test of 23.
> t/01dbadaptor..... Dubious, test returned 1 (wstat 256, 0x100)
> Failed 1/23 subtests
> t/02species.......ok
> t/03simpleseq.....ok
> t/04swiss.........ok
> t/05seqfeature....ok
> t/06comment.......ok
> t/07dblink........ok
> t/08genbank.......ok
> t/09fuzzy2........5/23
> #   Failed (TODO) test in t/09fuzzy2.t at line 64.
> #          got: undef
> #     expected: 'Q9QYG8'
> t/09fuzzy2........ok
> t/10ensembl.......ok
> t/11locuslink.....ok
> t/12ontology......ok
> t/13remove........ok
> t/14query.........ok
> t/15cluster.......ok
> t/16obda..........ok
>
> Test Summary Report
> -------------------
> t/01dbadaptor (Wstat: 256 Tests: 23 Failed: 1)
>  Failed test:  16
>  Non-zero exit status: 1
> Files=16, Tests=1479, 15 wallclock secs ( 0.27 usr  0.10 sys + 11.15  
> cusr  1.11 csys = 12.63 CPU)
> Result: FAIL
> Failed 1/16 test programs. 1/1479 subtests failed.
>
> -- --
>
> Johann Pellet
> IE Bioinformatique
> INSERM U851, I-MAP CERVI
> 21, Avenue Tony Garnier
> 69365 Lyon cedex 07 France
>
>
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> Bioperl-l at lists.open-bio.org
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