[Bioperl-l] Bioperl Installation
stevey_mac2k2 at hotmail.com
Mon Jul 6 17:11:14 EDT 2009
I'm just hanging on the question at the moment.. not sure whether to install all [a] or [n]one. I'm probably going to go with [a]ll
From: David.Messina at sbc.su.se
Date: Mon, 6 Jul 2009 23:09:05 +0200
Subject: Re: [Bioperl-l] Bioperl Installation
To: stevey_mac2k2 at hotmail.com
CC: bioperl-l at lists.open-bio.org
* XML::SAX (0.14) is installed, but we prefer to have 0.15 (wanted for parsing xml, used by Bio::SearchIO::blastxml, Bio::SeqIO::tigrxml and Bio::SeqIO::bsml_sax)
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versionsof the modules indicated above before proceeding with this installation
This "error/warning" refers to XML::SAX. I'm pretty sure that's optional. Not exactly sure why it's getting called out specifically here, but I think you can safely ignore it.
Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively? [a]
You went ahead and answered this question, right? The installation should have started at this point.
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