cjfields at illinois.edu
Tue Jul 7 13:52:44 EDT 2009
Sorry about that last post, thought you were reporting a problem not
inquiring about one.
Here's what we have:
Not sure but from the last few reports this is still a problem with
RepeatMasker and bioperl. I'll try looking into it from our end.
On Jul 7, 2009, at 8:58 AM, Robert Hubley wrote:
> This list email as forwarded to us by a colleague. I fixed this bug
> awhile back and I just double checked 3.2.8 and don't see any
> problems with the options -noint or -lcambig. Could someone help us
> determine how this is breaking bio-perl?
> |We have told the guys at RepeatMasker that RM-3.1.6 have a problem
> |causing Bio::Tools::RepeatMasker to crash in November 2006 (Bug
> |And as of today, they are now at 3.2.8, and the problem is not fixed.
> |And I don't want my project to be stalled-- any tips for a
> ||Perhaps you already know about this, but in RepeatMasker 3.1.6 -
> noint ||cannot be used because of error 'Unknown option: noint-
> ||This is caused by line 1131 having no space after the "-noint". ||
> Likewise, -lcambig on 1128 would probably suffer a similar problem.
> ||Will this be fixed in the next version, and how often do you
> release new ||versions?
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