[Bioperl-l] While loop - SearchIO for BioPerl

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Wed Jul 8 20:25:34 EDT 2009


> Where Hit= gnl|DAS|12277,Start = 7410,End = 7433 is the last one.
> I don't need these duplicates.
> How can I fix that?

>                        $start = $hsp->hit->start;
>                        $end = $hsp->hit->end;

Are you sure you mean $hsp->hit->start ?
Perhaps you mean $hsp->start() or $hsp->start('hit') ?

--Torsten Seemann
--Victorian Bioinformatics Consortium, Dept. Microbiology, Monash
University, AUSTRALIA

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