[Bioperl-l] While loop - SearchIO for BioPerl

Jason Stajich jason at bioperl.org
Wed Jul 8 20:50:54 EDT 2009


both work...TMTOWTDI
$hsp->query->start and $hsp->start('query') are equivalent.
as are $hsp->hit->start and $hsp->start('hit') .

On Jul 8, 2009, at 5:25 PM, Torsten Seemann wrote:

> Inna,
>
>> Where Hit= gnl|DAS|12277,Start = 7410,End = 7433 is the last one.
>> I don't need these duplicates.
>> How can I fix that?
>
>>                        $start = $hsp->hit->start;
>>                        $end = $hsp->hit->end;
>
> Are you sure you mean $hsp->hit->start ?
> Perhaps you mean $hsp->start() or $hsp->start('hit') ?
>
>
> --Torsten Seemann
> --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash
> University, AUSTRALIA
>
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--
Jason Stajich
jason at bioperl.org



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