[Bioperl-l] Bioperl Entrez Esearch

Smithies, Russell Russell.Smithies at agresearch.co.nz
Tue Jul 14 18:33:55 EDT 2009


You sure can.
Take a look at http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook


--Russell

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Rajasekar Karthik
> Sent: Wednesday, 15 July 2009 10:23 a.m.
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Bioperl Entrez Esearch
> 
> Hi,
> I an new to Bioperl. How can I do an Entrez Esearch using Bioperl?
> 
> For example, I want to do an exact title search in pubmed
> Title: Guidelines for quantitative rt-PCR
> 
> Using HTTP Get, I would do something like this
> URL:
> http://www.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&field=titl&te
> rm=Guidelines%20for%20quantitative%20rt-PCR
> to get the response XML.
> 
> How can I use Bioperl to do the above action?
> 
> Thanks.
> 
> --
> Best Regards,
> Rajasekar Karthik
> karthik085 at gmail.com
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
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