[Bioperl-l] ubuntu installation

Mark A. Jensen maj at fortinbras.us
Wed Jul 22 20:23:09 EDT 2009

Bioperl-max ( my public VM on Amazon ) is Ubuntu Hardy-- 
I set up everything (live, db, tools, biosql) from an svn checkout
of the various trunks, and built by
'perl Build.PL; ./Build ; ./Build test; ./Build install'.
(Also needed to apt-get svn; no problem.)
Worked fine. If Dazhi wants a particular release, he could
check out a release tag instead of trunk. More info at

----- Original Message ----- 
From: "Hilmar Lapp" <hlapp at gmx.net>
To: "BioPerl List" <bioperl-l at lists.open-bio.org>
Cc: "Dazhi Jiao" <dazhi.jiao at gmail.com>
Sent: Wednesday, July 22, 2009 8:03 PM
Subject: [Bioperl-l] ubuntu installation

> Apparently when you say "apt-get install bioperl" on Ubuntu you get  the 1.5.2 
> release. I don't know anything about BioPerl packaging on  Ubuntu but thought 
> I'd check whether someone who knows (or who  maintains that package?) is here 
> and can offer some advice or comment?
> See 
> http://phylr-gsoc.blogspot.com/2009/07/setting-up-biosql-101-on-postgresql-83.html
> Dazhi is one of our Google Summer of Code students.
> -hilmar
> -- 
> ===========================================================
> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
> ===========================================================
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