[Bioperl-l] a HOWTO for Tiling

Mark A. Jensen maj at fortinbras.us
Mon Jun 1 15:03:05 EDT 2009

Thanks, Chris--

Bio::Search::Tiling is now ported to core; the snapshot of the ported version is 
in bioperl-dev/tags/tiling-port-to-core-060109.
Bunch o' tests performed by t/SearchIO/Tiling.t; bunch more if one sets 

Cry 'Havoc!' and let slip the dogs of war...


----- Original Message ----- 
From: "Chris Fields" <cjfields at illinois.edu>
To: "Mark A. Jensen" <maj at fortinbras.us>
Cc: "Sendu Bala" <bix at sendu.me.uk>; "Dave Messina" <dave at davemessina.com>; 
"BioPerl List" <bioperl-l at lists.open-bio.org>
Sent: Monday, June 01, 2009 12:14 PM
Subject: Re: [Bioperl-l] a HOWTO for Tiling

>I think, as long is it doesn't significantly impact SearchIO  performance wise 
>(from reading the HOWTO I can't see how it will), I  say commit away. In fact, 
>I consider this a bug fix that should be in  the next 1.6 point release. We 
>should add deprecation warnings where  needed for 1.7...
> chris
> On Jun 1, 2009, at 9:55 AM, Mark A. Jensen wrote:
>> Hi All
>> Please peruse http://www.bioperl.org/wiki/HOWTO:Tiling for an  exhibition of 
>> B::S::Tiling, use cases, code snippets, design,  implementation and algorithm 
>> discussions. We're just about ready to  port over to core from bioperl-dev; 
>> please shout out if this is not  a good idea.
>> cheers and thanks for all input--
>> Mark
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
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