[Bioperl-l] Fwd: Hackathon tomorrow (I think)

Chris Fields cjfields at illinois.edu
Wed Jun 24 23:54:28 EDT 2009


I have no idea; I don't think there are many bioperl devs attending  
this year unfortunately.  Any meetings in the next year where we could  
set up a bioperl hackathon?  I will likely be available to attend if  
it's stateside...

chris

On Jun 24, 2009, at 9:31 PM, Kevin Clancy wrote:

>
> is there an intention to have a hackathon at ISMB this weekend - I  
> know there is a 2 day BOSC
> kevin
>
>> From: cjfields at illinois.edu
>> To: jay at jays.net
>> Date: Wed, 24 Jun 2009 16:10:34 -0500
>> CC: vecchi.b at gmail.com; bioperl-l at bioperl.org
>> Subject: Re: [Bioperl-l] Fwd: Hackathon tomorrow (I think)
>>
>>
>> On Jun 24, 2009, at 11:44 AM, Jay Hannah wrote:
>>
>>> On Jun 24, 2009, at 12:26 PM, Chris Fields wrote:
>>>> Let me know if anyone needs collab on biomoose on github; Mark
>>>> Jensen's already added.
>>>
>>> Anything on github should be trivial, even with no perms -- we can
>>> just fork and then send you (whoever) pull requests. github++  :)
>>>
>>>> 1) Any help towards bugzilla fixes would be most welcome.
>>>
>>> I don't know how to make any progress in bugzilla if no one has a
>>> commit bit...?
>>
>> For some reason I thought you had a commit bit; we can add you in if
>> needed.  Anyway, patches are most definitely welcome ;>
>>
>>>> 2) Better GFF3 integration
>>>> 3) Typed but lightweight seqfeatures
>>>
>>> Are there bugzilla tickets (or somewhere) describing those?
>>
>> No as the issues are more complex than one single bug, but we do have
>> something to help track for the time being:
>>
>> http://www.bioperl.org/wiki/GFF_Refactor
>> http://www.bioperl.org/wiki/Align_Refactor
>>
>> I'll probably file TODOs during the process for those refactors.  The
>> easiest to tackle would be probably be Align/LocatableSeq refactors.
>>
>>> I wonder if anyone can help me get out of sporadic MailMan
>>> purgatory...
>>>
>>> Thanks,
>>>
>>> j
>>
>> -c
>>
>> PS - Don't feel constrained by the above.  There are many many areas
>> to contribute to.
>>
>>
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