[Bioperl-l] experimental IO module for exporting OWL from GFF

Mark A. Jensen maj at fortinbras.us
Thu Jun 25 21:08:43 EDT 2009


This sounds very Dev to me. Also cool.
MAJ
----- Original Message ----- 
From: "Chris Mungall" <cjm at berkeleybop.org>
To: "BioPerl List" <bioperl-l at lists.open-bio.org>
Sent: Thursday, June 25, 2009 8:32 PM
Subject: [Bioperl-l] experimental IO module for exporting OWL from GFF


>
> I've written a module Bio::FeatureIO::seqont_owl, which generates  Sequence 
> Ontology compliant RDF/OWL. This will allow for example  loading of GFF into 
> triplestores and inference using OWL reasoners.
>
> - It's experimental, fairly incomplete, and subject to change
> - Relies on an experimental extension of SO
> - Probably of interest to a minority of bp users
> - It's not yet fully documented (but there will be a paper)
> - It doesn't introduce any additional dependencies (all done via  XML::Writer, 
> which is already a dependency)
> - Doesn't otherwise impinge on existing code
>
> I'd like to get this under source control. Is the appropriate place  for this:
>
> - HEAD
> - a branch
> - bioperl-dev
> - a separate repository
>
> ?
>
> Cheers
> Chris
>
>
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