[Bioperl-l] Random nucleotide string generator?

Dave Messina David.Messina at sbc.su.se
Fri Jun 26 06:15:04 EDT 2009


The Bioperl solution piggybacks on EMBOSS. See Chris Fields' comment on this
post from Neil Saunders' blog:
http://nsaunders.wordpress.com/2007/07/25/howto-generate-random-sequences-using-emboss-and-perl/


You can also do this outside of BioPerl using shuffle from Sean Eddy's SQUID
package, available here:
[ SQUID ftp site ] <ftp://selab.janelia.org/pub/software/squid/>

<ftp://selab.janelia.org/pub/software/squid/>

If not - what should the namespace be for such a module should it be undone
> and desirable?


Perhaps add it to Bio::SeqUtils?


Dave


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