[Bioperl-l] Getting errors parsing TIGR XML in SeqIO

Moore, Jonathan Jonathan.Moore at warwick.ac.uk
Fri Jun 26 05:55:54 EDT 2009


I'm trying to parse the TAIR9 Arabidopsis release from the TIGR XML files at the TAIR FTP site.

I've tried SeqIO with both tigr and tigrxml formats but both are giving errors in 1.6.0.  Has anyone advice on whether it's likely to be doable, or should I wait til the .gb files are available?

Jay Moore



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