[Bioperl-l] Getting errors parsing TIGR XML in SeqIO

Chris Fields cjfields at illinois.edu
Fri Jun 26 13:00:41 EDT 2009


If there are errors this should be submitted as a bug.  You should  
attach example data to the report after it (e.g. don't copy&paste into  
the text box).

http://www.bioperl.org/wiki/Bugs

chris

On Jun 26, 2009, at 4:55 AM, Moore, Jonathan wrote:

> I'm trying to parse the TAIR9 Arabidopsis release from the TIGR XML  
> files at the TAIR FTP site.
>
> I've tried SeqIO with both tigr and tigrxml formats but both are  
> giving errors in 1.6.0.  Has anyone advice on whether it's likely to  
> be doable, or should I wait til the .gb files are available?
>
> Jay Moore
>
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