[Bioperl-l] Fwd: Hackathon tomorrow (I think)

Kevin Clancy kpclancy at hotmail.com
Sat Jun 27 06:04:20 EDT 2009


I think ismb will be in Boston in 2010 (feels odd just typing that...)

maybe that is enough of a running start to set something up.

kevin
 
> CC: jay at jays.net; vecchi.b at gmail.com; bioperl-l at bioperl.org
> From: cjfields at illinois.edu
> To: kpclancy at hotmail.com
> Subject: Re: [Bioperl-l] Fwd: Hackathon tomorrow (I think)
> Date: Wed, 24 Jun 2009 22:54:28 -0500
> 
> I have no idea; I don't think there are many bioperl devs attending 
> this year unfortunately. Any meetings in the next year where we could 
> set up a bioperl hackathon? I will likely be available to attend if 
> it's stateside...
> 
> chris
> 
> On Jun 24, 2009, at 9:31 PM, Kevin Clancy wrote:
> 
> >
> > is there an intention to have a hackathon at ISMB this weekend - I 
> > know there is a 2 day BOSC
> > kevin
> >
> >> From: cjfields at illinois.edu
> >> To: jay at jays.net
> >> Date: Wed, 24 Jun 2009 16:10:34 -0500
> >> CC: vecchi.b at gmail.com; bioperl-l at bioperl.org
> >> Subject: Re: [Bioperl-l] Fwd: Hackathon tomorrow (I think)
> >>
> >>
> >> On Jun 24, 2009, at 11:44 AM, Jay Hannah wrote:
> >>
> >>> On Jun 24, 2009, at 12:26 PM, Chris Fields wrote:
> >>>> Let me know if anyone needs collab on biomoose on github; Mark
> >>>> Jensen's already added.
> >>>
> >>> Anything on github should be trivial, even with no perms -- we can
> >>> just fork and then send you (whoever) pull requests. github++ :)
> >>>
> >>>> 1) Any help towards bugzilla fixes would be most welcome.
> >>>
> >>> I don't know how to make any progress in bugzilla if no one has a
> >>> commit bit...?
> >>
> >> For some reason I thought you had a commit bit; we can add you in if
> >> needed. Anyway, patches are most definitely welcome ;>
> >>
> >>>> 2) Better GFF3 integration
> >>>> 3) Typed but lightweight seqfeatures
> >>>
> >>> Are there bugzilla tickets (or somewhere) describing those?
> >>
> >> No as the issues are more complex than one single bug, but we do have
> >> something to help track for the time being:
> >>
> >> http://www.bioperl.org/wiki/GFF_Refactor
> >> http://www.bioperl.org/wiki/Align_Refactor
> >>
> >> I'll probably file TODOs during the process for those refactors. The
> >> easiest to tackle would be probably be Align/LocatableSeq refactors.
> >>
> >>> I wonder if anyone can help me get out of sporadic MailMan
> >>> purgatory...
> >>>
> >>> Thanks,
> >>>
> >>> j
> >>
> >> -c
> >>
> >> PS - Don't feel constrained by the above. There are many many areas
> >> to contribute to.
> >>
> >>
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> >
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> 



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