June 2009 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Mon Jun 1 04:06:58 EDT 2009
Ending: Tue Jun 30 23:48:11 EDT 2009
Messages: 235

• [Bioperl-l] Extract genomic data from GenBank   Will Bryant
  • [Bioperl-l] Extract genomic data from GenBank   Dave Messina
• [Bioperl-l] problem with bioperl install   Kristina Fontanez
• [Bioperl-l] a HOWTO for Tiling   Mark A. Jensen
  • [Bioperl-l] a HOWTO for Tiling   Chris Fields
    • [Bioperl-l] a HOWTO for Tiling   Mark A. Jensen
• [Bioperl-l] problem with bioperl install   Chris Fields
  • [Bioperl-l] problem with bioperl install   Dan Bolser
    • [Bioperl-l] problem with bioperl install   Chris Fields
      • [Bioperl-l] problem with bioperl install   Koen van der Drift
      • [Bioperl-l] problem with bioperl install   Chris Fields
• [Bioperl-l] Refseq Hits   shalabh sharma
  • [Bioperl-l] Refseq Hits   Jonathan Crabtree
    • [Bioperl-l] Refseq Hits   shalabh sharma
      • [Bioperl-l] Refseq Hits   Smithies, Russell
• [Bioperl-l] Creating a fastq format file?   Tristan Lefebure
• [Bioperl-l] Bio::Search::Tiling   Mark A. Jensen
• [Bioperl-l] gbf to gff   shalabh sharma
  • [Bioperl-l] gbf to gff   Scott Cain
• [Bioperl-l] GBroswe2 - feature details   Alper Yilmaz
  • [Bioperl-l] GBroswe2 - feature details   Smithies, Russell
• [Bioperl-l] [Bioperl-guts-l] Bug in genbank.pm?   Chris Fields
• [Bioperl-l] finding SNPs in a given region   kayj
• [Bioperl-l] How to extract SNPs   kayj
• [Bioperl-l] Bio:Das 1.11 installation problem   Bernd Jagla
  • [Bioperl-l] Bio:Das 1.11 installation problem   Lincoln Stein
    • [Bioperl-l] Bio:Das 1.11 installation problem   bernd at pasteur.fr
      • [Bioperl-l] Bio:Das 1.11 installation problem   Stefan Kirov
      • [Bioperl-l] Bio:Das 1.11 installation problem   Bernd Jagla
      • [Bioperl-l] Bio:Das 1.11 installation problem   Kevin Brown
      • [Bioperl-l] Bio:Das 1.11 installation problem   Bernd Jagla
      • [Bioperl-l] Bio:Das 1.11 installation problem   Bernd Jagla
• [Bioperl-l] fasta conversion   lsbrath at gmail.com
  • [Bioperl-l] fasta conversion   Mark A. Jensen
• [Bioperl-l] fetch gene sequence with EUtilities.pm   Adam Witney
  • [Bioperl-l] fetch gene sequence with EUtilities.pm   Chris Fields
    • [Bioperl-l] fetch gene sequence with EUtilities.pm   Adam Witney
      • [Bioperl-l] fetch gene sequence with EUtilities.pm   Chris Fields
• [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Chris Fields
  • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Scott Markel
    • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Chris Fields
  • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Mark A. Jensen
  • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Hilmar Lapp
    • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Florent Angly
      • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Chris Fields
      • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Robert Buels
      • [Bioperl-l] use of no_* to mean 'number_of', negative booleans   Chris Fields
      • [Bioperl-l] deprecated(), was Re: use of no_* to mean 'number_of', negative booleans   Chris Fields
      • [Bioperl-l] deprecated(), was Re: use of no_* to mean 'number_of', negative booleans   Robert Buels
      • [Bioperl-l] deprecated(), was Re: use of no_* to mean 'number_of', negative booleans   Chris Fields
• [Bioperl-l] Project Help   Mauricio Herrera Cuadra
  • [Bioperl-l] Project Help   Hilmar Lapp
• [Bioperl-l] announcing bioperl-max, a public AMI   Mark A. Jensen
  • [Bioperl-l] announcing bioperl-max, a public AMI   Chris Fields
    • [Bioperl-l] announcing bioperl-max, a public AMI   Mark A. Jensen
    • [Bioperl-l] announcing bioperl-max, a public AMI   Mark A. Jensen
  • [Bioperl-l] announcing bioperl-max, a public AMI   Hilmar Lapp
• [Bioperl-l] Bio::Restriction::Analysis. Exception when using rebase file.   Rasmus Ory Nielsen
  • [Bioperl-l] Bio::Restriction::Analysis. Exception when using rebasefile.   Mark A. Jensen
    • [Bioperl-l] Bio::Restriction::Analysis. Exception when using rebasefile.   Chris Fields
      • [Bioperl-l] Bio::Restriction::Analysis. Exception when using rebasefile.   Mark A. Jensen
      • [Bioperl-l] Bio::Restriction::Analysis. Exception when usingrebasefile.   Mark A. Jensen
      • [Bioperl-l] Bio::Restriction::Analysis. Exception when usingrebasefile.   Robert Buels
      • [Bioperl-l] Bio::Restriction::Analysis. Exceptionwhen usingrebasefile.   Mark A. Jensen
  • [Bioperl-l] Bio::Restriction refactor [Was: Bio::Restriction::Analysis. Exception when using rebasefile.]   Mark A. Jensen
    • [Bioperl-l] Bio::Restriction refactor [Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Mark A. Jensen
      • [Bioperl-l] Bio::Restriction refactor [Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Chris Fields
      • [Bioperl-l] Bio::Restriction refactor[Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Mark A. Jensen
    • [Bioperl-l] Bio::Restriction refactor [Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Mark A. Jensen
      • [Bioperl-l] Bio::Restriction refactor [Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Smithies, Russell
• [Bioperl-l] EUtilities Cookbook example fails   Adam Witney
  • [Bioperl-l] EUtilities Cookbook example fails   Chris Fields
    • [Bioperl-l] EUtilities Cookbook example fails   Adam Witney
• [Bioperl-l] EUtilities Cookbook example fails   Chris Fields
• [Bioperl-l] 1.6 on doc.bioperl.org?   Mark A. Jensen
  • [Bioperl-l] 1.6 on doc.bioperl.org?   Mauricio Herrera Cuadra
    • [Bioperl-l] 1.6 on doc.bioperl.org?   Mark A. Jensen
      • [Bioperl-l] 1.6 on doc.bioperl.org?   Mauricio Herrera Cuadra
      • [Bioperl-l] 1.6 on doc.bioperl.org?   Chris Fields
      • [Bioperl-l] 1.6 on doc.bioperl.org?   Mark A. Jensen
• [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Xianjun Dong
  • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Scott Cain
    • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Xianjun Dong
• [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Scott Cain
  • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Xianjun Dong
    • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Xianjun Dong
      • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Scott Cain
      • [Bioperl-l] background layer is not supported in Bioperl 1.6 for Bio::Graphics::Glyph   Scott Cain
• [Bioperl-l] sub sampling   shalabh sharma
  • [Bioperl-l] sub sampling   Mark A. Jensen
• [Bioperl-l] Alignment->slice() issue?   Malcolm Cook
  • [Bioperl-l] Alignment->slice() issue?   Chris Fields
    • [Bioperl-l] Alignment->slice() issue?   Cook, Malcolm
  • [Bioperl-l] Alignment->slice() issue?   Kevin Brown
    • [Bioperl-l] Alignment->slice() issue?   bill at genenformics.com
• [Bioperl-l] Hits Object   Remi Planel
  • [Bioperl-l] Hits Object   Mark A. Jensen
• [Bioperl-l] error message: can't call method "next_hit" on and undefined value   Mgavi Brathwaite
  • [Bioperl-l] error message: can't call method "next_hit" on andundefined value   Mark A. Jensen
  • [Bioperl-l] error message: can't call method "next_hit" on and undefined value   Robert Buels
• [Bioperl-l] Bio::Restriction refactor [Was:Bio::Restriction::Analysis. Exception when using rebasefile.]   Chris Fields
• [Bioperl-l] Next-gen modules   Elia Stupka
  • [Bioperl-l] Next-gen modules   Mark A. Jensen
    • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Peter
    • [Bioperl-l] Next-gen modules   Tristan Lefebure
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Tristan Lefebure
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Sendu Bala
      • [Bioperl-l] Next-gen modules   michael watson (IAH-C)
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Mark A. Jensen
      • [Bioperl-l] Next-gen modules   Hilmar Lapp
      • [Bioperl-l] Next-gen modules   Sendu Bala
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Sendu Bala
      • [Bioperl-l] Next-gen modules   George Hartzell
      • [Bioperl-l] Next-gen modules   Sendu Bala
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Giles Weaver
      • [Bioperl-l] Next-gen modules   Chris Fields
  • [Bioperl-l] Next-gen modules   Mark A. Jensen
    • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Mark A. Jensen
  • [Bioperl-l] Next-gen modules   Peter
  • [Bioperl-l] Next-gen modules   Chris Fields
    • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Mark A. Jensen
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Elia Stupka
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Peter Rice
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Peter Rice
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Peter Rice
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Peter
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Peter Rice
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Chris Fields
      • [Bioperl-l] Next-gen modules   Chris Fields
  • [Bioperl-l] Next-gen modules   John Marshall
    • [Bioperl-l] Next-gen modules   Elia Stupka
  • [Bioperl-l] Next-gen modules   Lincoln Stein
• [Bioperl-l] bioperl-dev or branch? : redux   Mark A. Jensen
  • [Bioperl-l] bioperl-dev or branch? : redux   Chris Fields
• [Bioperl-l] svn error   Jeffrey Barrick
• [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Charles Tilford
  • [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Chris Fields
    • [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Charles Tilford
  • [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Cook, Malcolm
    • [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Charles Tilford
      • [Bioperl-l] Bio::SeqIO::scf traces scrambled?   Chris Fields
• [Bioperl-l] Problems parsing scientific name from a Genbank file   Cesar Arze
  • [Bioperl-l] Problems parsing scientific name from a Genbank file   Roy Chaudhuri
• [Bioperl-l] Anyone at YAPC?   George Hartzell
  • [Bioperl-l] Anyone at YAPC?   Chris Fields
    • [Bioperl-l] Anyone at YAPC?   Robert Buels
      • [Bioperl-l] Anyone at YAPC?   Mark A. Jensen
• [Bioperl-l] changing parameters in Bio::Tools::Run::RemoteBlast   Chris Fields
• [Bioperl-l] Clustalw   Offord, Victoria
  • [Bioperl-l] Clustalw   Kevin Brown
• [Bioperl-l] Hackathon tomorrow (I think)   Jay Hannah
• [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Bruno Vecchi
  • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Chris Fields
    • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Jay Hannah
      • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Chris Fields
      • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Kevin Clancy
      • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Chris Fields
      • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Luis Miguel Rodríguez
      • [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Kevin Clancy
• [Bioperl-l] Fwd: Hackathon tomorrow (I think)   Bruno Vecchi
• [Bioperl-l] Bioperl_scripts   Bernd Web
  • [Bioperl-l] Bioperl_scripts   Chris Fields
• [Bioperl-l] Extreme newbie question.   Adlai Burman
  • [Bioperl-l] Extreme newbie question.   Kevin Brown
    • [Bioperl-l] Extreme newbie question.   Adlai Burman
      • [Bioperl-l] Extreme newbie question.   Chris Fields
      • [Bioperl-l] Extreme newbie question.   Sendu Bala
  • [Bioperl-l] Extreme newbie question.   Dave Messina
• [Bioperl-l] Bio::LocatableSeq and Annotation vs Feature   Chase Miller
  • [Bioperl-l] Bio::LocatableSeq and Annotation vs Feature   Chris Fields
    • [Bioperl-l] Bio::LocatableSeq and Annotation vs Feature   Chase Miller
• [Bioperl-l] Extreme newbie question.   Kevin Brown
• [Bioperl-l] experimental IO module for exporting OWL from GFF   Chris Mungall
  • [Bioperl-l] experimental IO module for exporting OWL from GFF   Mark A. Jensen
    • [Bioperl-l] experimental IO module for exporting OWL from GFF   Chris Fields
• [Bioperl-l] BioPerl hackathon, hooray!   Robert Buels
  • [Bioperl-l] [yapc] BioPerl hackathon, hooray!   Jay Hannah
    • [Bioperl-l] [yapc] BioPerl hackathon, hooray!   Dave Messina
• [Bioperl-l] Random nucleotide string generator?   Roger Hall
  • [Bioperl-l] Random nucleotide string generator?   Aidan Budd
  • [Bioperl-l] Random nucleotide string generator?   Luis Miguel Rodríguez
  • [Bioperl-l] Random nucleotide string generator?   Dave Messina
• [Bioperl-l] Getting errors parsing TIGR XML in SeqIO   Moore, Jonathan
  • [Bioperl-l] Getting errors parsing TIGR XML in SeqIO   Chris Fields
  • [Bioperl-l] Getting errors parsing TIGR XML in SeqIO   Jason Stajich
• [Bioperl-l] bioperl installation   priya darshini
• [Bioperl-l] Bio::Assembly::IO   Fungazid
• [Bioperl-l] Random nucleotide string generator?   Dave Messina
• [Bioperl-l] test suite failing on mac os x 10.5   cody h
• [Bioperl-l] Fw: Inquiry about a prog written by [MAJ]   Mark A. Jensen
• [Bioperl-l] BioPerl at YAPC::2010   Robert Buels
  • [Bioperl-l] BioPerl at YAPC::2010   Scott Cain
  • [Bioperl-l] BioPerl at YAPC::2010   Chris Fields
  • [Bioperl-l] BioPerl at YAPC::2010   George Hartzell
    • [Bioperl-l] BioPerl at YAPC::2010   Chris Fields
  • [Bioperl-l] BioPerl at YAPC::2010   Mark A. Jensen
    • [Bioperl-l] BioPerl at YAPC::2010   Mark A. Jensen
    • [Bioperl-l] BioPerl at YAPC::2010   George Hartzell
• [Bioperl-l] different results with remote-blast skript   Jonas Schaer
• [Bioperl-l] Installing Bioperl on Mac OS X 10.5.7   stephenmcgowan1
• [Bioperl-l] PopGen   Richard Harrison
• [Bioperl-l] Webmail Maintenance Notice   Webmail Support Team
• [Bioperl-l] Webmail Maintenance Notice   Webmail Support Team
• [Bioperl-l] Bioperl-l Digest, Vol 74, Issue 25   Paola Bisignano
  • [Bioperl-l] Parsing a FASTA file (Was: Bioperl-l Digest, Vol 74, Issue 25)   Mark A. Jensen
• [Bioperl-l] Bio::Tools::Run::RepeatMasker crashes perl   John M.C. Ma
• [Bioperl-l] FASTQ output   Chris Fields

Last message date: Tue Jun 30 23:48:11 EDT 2009
Archived on: Sun Jul 5 00:43:51 EDT 2009

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...