[Bioperl-l] Bio::DB::GFF again

Alper Yilmaz alperyilmaz at gmail.com
Mon Mar 2 22:49:47 EST 2009


I have another question about Bio::DB::GFF module. I went through the manual
couldn't find the answer. Maybe it's easy solution and I don't know it.

Is it possible to overlay protein domain coordinates on genomic coordinates
in Bio::DB::GFF?
Let's say I want to extract -nucleotide sequence- of a protein domain. If my
input is protein domain location (as amino acid coordinates) can I have dna
sequence by using Bio::DB::GFF for the same region, (excluding intron
sequences)?

thanks,

Alper Yilmaz


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