[Bioperl-l] problem of bioperl on mac

Kevin Brown Kevin.M.Brown at asu.edu
Wed Mar 4 15:56:44 EST 2009


And for those that are interested, here's what version of bioperl are
available via fink for various levels of OSX
http://pdb.finkproject.org/pdb/package.php/bioperl-pm586 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of MADSGENE
> Sent: Wednesday, March 04, 2009 1:52 PM
> To: Bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] problem of bioperl on mac
> 
> 
> Hi bioperlers,
> 
> Thanks for all responses.
> I removed the bioperl and reinstalled it by fink. It works.
> 
> Regards
> 
> Xia
> 
> 
> 
> 
> 
> MADSGENE wrote:
> > 
> > 
> > I installed the bioperl-pm586 version 1.5.2-4 in my macbook(MAC OS X
> > version 10.5.6) using fink. I also found it in 
> /sw/share/bioperl-pm586.
> > However I failed to get it when I typed "which". When I 
> typed >perl -e
> > 'print @INC', it displayed
> > /sw/lib/perl5/5.8.6/darwin-thread-multi-21evel...but no 
> information about
> > bioperl-pm586. I took the suggstion and added "setenv PERL5LIB
> > ${PERL5LIB}:/sw/share/bioperl-pm586 " into .bashrc, it 
> still did not work.
> > 
> > I am grateful to you if anyone could help me out.
> > I note there are two .bashrc files, one is in root and the 
> other in home.
> > If your suggestion is to modify these files, please let me 
> know which one.
> > 
> > Regards
> > 
> > Xia Wang
> > 
> > 
> > 
> > 
> 
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> 
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