[Bioperl-l] Indexing HMMER reports

Toni Hermoso Pulido toniher at softcatala.cat
Mon Mar 9 20:58:26 EDT 2009


Hello,

I'm trying to index HMMER reports using:
http://www.bioperl.org/wiki/Module:Bio::Index::Hmmer

However, I have not found enough information in the module code examples 
for being able to index and get info from those reports.

I would like to get HSP alignments associated to hit accession codes 
from reports distributed in several files.

Does anyone have experience on this?

After dumping variables, I think I'm just indexing report files, but not 
its contents.

Best regards,

-- 
Toni Hermoso Pulido
http://www.cau.cat


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