[Bioperl-l] Indexing HMMER reports
Mauricio Herrera Cuadra
mauricio at open-bio.org
Tue Mar 10 01:39:23 EDT 2009
I've been kind of disconnected from this stuff for a while but I "think"
you could use (or take ideas from) a script of mine in the core
If you give the script a file with the list of reports to parse, it will
print out most of the useful data from them. `bp_parse_hmmsearch.pl -h`
will provide more help about its use.
Toni Hermoso Pulido wrote:
> I'm trying to index HMMER reports using:
> However, I have not found enough information in the module code examples
> for being able to index and get info from those reports.
> I would like to get HSP alignments associated to hit accession codes
> from reports distributed in several files.
> Does anyone have experience on this?
> After dumping variables, I think I'm just indexing report files, but not
> its contents.
> Best regards,
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