[Bioperl-l] Emboss factory script

shweta kagliwal shwetakagliwal at gmail.com
Tue Mar 10 02:57:02 EDT 2009


I want to use Emboss programs.
I tried running the attached script.
But I get a warning:

Msg: Application [water] is not available.
can't call method "run" on an undefined value at bpe.pl line 15.

I am not able to understand the problem. I just want to make pairwise
alignments using emboss programs 'water' and 'needle' programatically.
Please help me.
Thanks.
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