[Bioperl-l] Gene name to Accession id

Smithies, Russell Russell.Smithies at agresearch.co.nz
Wed Mar 11 15:26:46 EDT 2009


The easiest way is to grab the gene2accession or gene2refseq lists from here: ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/



--Russell Smithies 

Bioinformatics Applications Developer 
T +64 3 489 9085 
E  russell.smithies at agresearch.co.nz 

Invermay  Research Centre 
Puddle Alley, 
Mosgiel, 
New Zealand 
T  +64 3 489 3809   
F  +64 3 489 9174  
www.agresearch.co.nz 


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of gopu_36
> Sent: Wednesday, 11 March 2009 7:44 p.m.
> To: Bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Gene name to Accession id
> 
> 
> Hi
> I have a gene list as below:
> 
> Ets2
> Vegfc
> Capg
> Ly6c1
> Pdlim2
> Sema3f
> Tes
> Arsj
> Figf
> Osr1
> Stc1
> Ptgs1
> 6330406I15Rik
> Fosl2
> Ptgs1
> 
> How do I get the accesion id like NM_001025602 for the above gene list?
> Thanks.
> 
> Regards
> --
> View this message in context: http://www.nabble.com/Gene-name-to-Accession-id-
> tp22449585p22449585.html
> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
=======================================================================
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.
=======================================================================



More information about the Bioperl-l mailing list