[Bioperl-l] Gene name to Accession id

gopu_36 gopu_36 at yahoo.com
Wed Mar 11 23:24:08 EDT 2009


Thanks Russell. A great piece of information.

Smithies, Russell wrote:
> 
> The easiest way is to grab the gene2accession or gene2refseq lists from
> here: ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/
> 
> 
> 
> --Russell Smithies 
> 
> Bioinformatics Applications Developer 
> T +64 3 489 9085 
>russell.smithies at agresearch.co.nz 
> 
> Invermay  Research Centre 
> Puddle Alley, 
> Mosgiel, 
> New Zealand 
> T  +64 3 489 3809   
> F  +64 3 489 9174  
> www.agresearch.co.nz 
> 
> 
>> -----Original Message-----
>> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
>> bounces at lists.open-bio.org] On Behalf Of gopu_36
>> Sent: Wednesday, 11 March 2009 7:44 p.m.
>> To: Bioperl-l at lists.open-bio.org
>> Subject: [Bioperl-l] Gene name to Accession id
>> 
>> 
>> Hi
>> I have a gene list as below:
>> 
>> Ets2
>> Vegfc
>> Capg
>> Ly6c1
>> Pdlim2
>> Sema3f
>> Tes
>> Arsj
>> Figf
>> Osr1
>> Stc1
>> Ptgs1
>> 6330406I15Rik
>> Fosl2
>> Ptgs1
>> 
>> How do I get the accesion id like NM_001025602 for the above gene list?
>> Thanks.
>> 
>> Regards
>> --
>> View this message in context:
>> http://www.nabble.com/Gene-name-to-Accession-id-
>> tp22449585p22449585.html
>> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
>> 
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> =======================================================================
> Attention: The information contained in this message and/or attachments
> from AgResearch Limited is intended only for the persons or entities
> to which it is addressed and may contain confidential and/or privileged
> material. Any review, retransmission, dissemination or other use of, or
> taking of any action in reliance upon, this information by persons or
> entities other than the intended recipients is prohibited by AgResearch
> Limited. If you have received this message in error, please notify the
> sender immediately.
> =======================================================================
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> 

-- 
View this message in context: http://www.nabble.com/Gene-name-to-Accession-id-tp22449585p22469209.html
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.




More information about the Bioperl-l mailing list