[Bioperl-l] reading gff3?
Russell.Smithies at agresearch.co.nz
Thu Mar 12 18:42:08 EDT 2009
What's the trick to reading the fasta attached to gff files?
Bio:FeatureIO and Bio::Tools::GFF both seem to ignore it (unless I'm doing it wrong)
What I'm trying to do is read in a gff3 file (with attached fasta) then get the sequence for the CDS features contained within.
Bioinformatics Applications Developer
T +64 3 489 9085
E russell.smithies at agresearch.co.nz
Invermay Research Centre
T +64 3 489 3809
F +64 3 489 9174
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