[Bioperl-l] Extraction of exon, intron, promoter, UTR

Chris Fields cjfields at illinois.edu
Sat Mar 14 10:09:54 EDT 2009


On Mar 13, 2009, at 2:02 PM, Dave Messina wrote:

> Hmm, I bet the Gene Table info can be retrieved via EUtilities, for  
> which
> there is a BioPerl module.
> Can Chris or someone more familiar with EUtilities confim that?
>
>
>
> Dave

This can be done via EUtilities, but the data can be retrieved via  
Bio::DB::EntrezGene as a Bio::Seq.  See this HOWTO:

http://www.bioperl.org/wiki/HOWTO:Getting_Genomic_Sequences

chris



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