[Bioperl-l] script to calculate percentage identity for BLAT psl

gopu_36 gopu_36 at yahoo.com
Sat Mar 14 21:04:32 EDT 2009


Please let me know whether any other way of calculating the precentage
identity for commandline BLAT results? . Thanks.

gopu_36 wrote:
> 
> Hi,
> 
> I did go through FAQ from BLAT on how to calculate the precentage identity
> from http://genome.ucsc.edu/FAQ/FAQblat#blat4
> As a new comer, I don;t usederstand on how to implement this. Please let
> me know how to plugin the script for my output.psl file. Please let me
> know. It would be of great help.
> 
> Thanks and Regards.
> 

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