[Bioperl-l] BLAST + BioPerl

Jason Stajich jason at bioperl.org
Mon Mar 16 11:34:14 EDT 2009

I think it is best if you ask this question on the mailing list but  
the script search_overview.PLS that was previously in the scripts/ 
biographics directory but is now in the Bio-Graphics/scripts directory  
on sourceforge.

Examples like this also the bread and butter of the Bio-Graphics HOWTO  
on the bioperl website.


On Mar 16, 2009, at 7:51 AM, Christian M. Probst wrote:

> Hi, Jason.
> I have found your presentation about BioPerl I and II (CSHL
> Programming for Biology 2008) when I was looking for a way to format
> BLAST plain text output.
> I am looking specifically on creating the graphical view of HSPs.
> Although your code in that presentation does not create this, it has
> an example, mentioning Bio::Graphics as the way to do that (as it
> would be my first guess).
> My question is: how can I create a panel within the HTML page, showing
> the HSPs from a BLAST standalone txt result file? Is there a
> tutorial/file/presentation discussing this?
> Thanks in advance.
> Christian Probst
> Bioinformatics Lab.
> Carlos Chagas Institute
> Curitiba - PR   Brasil

Jason Stajich
jason at bioperl.org

More information about the Bioperl-l mailing list