[Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...
David.Messina at sbc.su.se
Fri Mar 20 14:14:00 EDT 2009
> where can I read more about selecting parameters for certain tasks?
I like the Korf, Yandell, and Bedell BLAST
For your tomato/potato, I would look at some of the specialized genomic
aligners, for example LAGAN<http://lagan.stanford.edu/lagan_web/index.shtml>
or AVID <http://baboon.math.berkeley.edu/mavid/>.
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