[Bioperl-l] retrieving gene sequence given protein id

Alden Huang alden.huang at gmail.com
Wed May 6 19:30:37 EDT 2009


I am pretty sure you can just do that on the NCBI website through
"Batch Entrez." Just select like gene or nucleotide for your database.
If I am wrong, sorry.

On Wed, May 6, 2009 at 4:21 AM, Daniel Webb <webb.daniel at yahoo.com> wrote:
>
> Hi all,
>
> is there a script or a module with which I could, given the list of protein gi or accessions, retrieve corresponding genes from Entrez Gene/GenBank? What I would like is sequence of the whole gene in fasta format, with all the introns and UTRs.
> I would be grateful for any help
>
> Dan
>
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>


More information about the Bioperl-l mailing list