[Bioperl-l] Warning while running bioperl StandAloneBlast.
Kevin.M.Brown at asu.edu
Tue May 19 11:50:15 EDT 2009
> Hi Praveen,
> Your script is bit confusing, i don't
> understand what you
> actually trying to do.
> But what i see is that you are parsing blast report without
> using SearchIO
> You have to include Bio::SearchIO in your script.
> Hope this helps.
Actually, he doesn't as it is included from the factory that is running
blast and returning the report.
> > Hi,
> > I am getting some warning along with results which says -->
> > Warning: Failed to initialize search. ISAM Error code is -5"
> > Can someone please let me know what this is all about.
This sounds like you are running into a database error, not a perl
script error. Something might be wrong with your blast database. Yep,
quick google search verifies that ISAM errors are a database problem.
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