[Bioperl-l] Parsing blast with Bio::SearchIO::get_aln

Mgavi Brathwaite lsbrath at gmail.com
Thu May 21 23:41:39 EDT 2009


Hello,

I am parsing a blast report. My script is returning the following output
to file:

Name: 13414|HD
Percent Identity:  100
Alignment:  Bio::SimpleAlign=HASH(0x40d0ac4)
How do I access " Bio::SimpleAlign=HASH(0x40d0ac4)" actual alignment for
this object?

LomSpace


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