[Bioperl-l] parsing KGML files
anupam.contact at gmail.com
Mon May 25 23:18:58 EDT 2009
> I am working on evolutionary dynamics of protein interaction
> networks for which I need enzyme-centric metabolic networks(i.e nodes in
> this network consists of enzymes and they are connected if the product of
> one is a substrate of other and/or they share a common metabolite). How can
> I parse KGML (KEGG XML) files to extract information in above mentioned
> For example....
> Source_node Destination node
> enzyme1 enzyme2
> enzyme3 enzyme5
> enzyme6 enzyme8
> enzyme1 interacts with enzyme2 because the product of the reaction
> catalysed by enzyme1 happens to be the substrate for enzyme2 etc.
> Any help will be appreciated.
> Thanks and Regards,
> Anupam Sinha,
> Graduate Student,
> Centre for DNA Fingerprinting and Diagnostics,
> Hyderabad, India-500001
More information about the Bioperl-l