[Bioperl-l] problem with bioperl install

Mark A. Jensen maj at fortinbras.us
Fri May 29 15:35:14 EDT 2009


The message says you are first updating your CPAN.pm.
That module needs modules you don't have, so

use cpan to install the dependencies you don't have, viz.
>     Test::Harness
>     File::HomeDir

$ cpan
>install Test::Harness
etc.
Then install CPAN.pm again (or run the Bioperl install again).

Lather, rinse, repeat the install of Bioperl until it completes without errors.

----- Original Message ----- 
From: "Kristina Fontanez" <fontanez at fas.harvard.edu>
To: <bioperl-l at bioperl.org>
Sent: Friday, May 29, 2009 3:07 PM
Subject: [Bioperl-l] problem with bioperl install


> Hello-
>
> I am trying to install bioperl and I ran into some problems. See list  below.
>
>
> CPAN.pm: Going to build A/AN/ANDK/CPAN-1.94.tar.gz
>
> Checking if your kit is complete...
> Looks good
> Warning: prerequisite File::HomeDir 0.69 not found.
> Warning: prerequisite Test::Harness 2.62 not found. We have 2.56.
> Writing Makefile for CPAN
> ---- Unsatisfied dependencies detected during [A/AN/ANDK/ 
> CPAN-1.94.tar.gz] -----
>     Test::Harness
>     File::HomeDir
>
>
> How can I fix this?
>
>
> Thanks,
> Kristina
> ---------------------------------------------------------------
> Kristina Fontanez
> PhD candidate
> Department of Organismic and Evolutionary Biology
> Cavanaugh lab
> Harvard University
> 16 Divinity Ave.
> Cambridge, MA 02138
>
> tel: 617-495-1138
> fax: 617-496-6933
> email: fontanez at fas.harvard.edu
>
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> 



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